SNP Profiles of CC 137 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	TT	CC	GT	CT	AC	CC	AA	CT	AA	GG	AG	CC	CT
1._CC_137	GG	TT	CC	GT	_	AC	_	AA	CT	_	GG	AG	CC	CT
2._RUQ_1637	_	_	CC	GT	CT	AC	CC	AA	CT	AA	_	AG	CC	-
3._CC_137	GG	TT	CC	GT	CT	AC	CC	AA	CT	AA	GG	AG	CC	CT
4._CC_137	GG	TT	CC	GT	CT	AC	CC	AA	CT	AA	GG	AG	CC	CT
5._CC_137	GG	TT	CC	GT	CT	AC	CC	AA	CT	AA	GG	AG	CC	CT
6._GC-01-134-7-11	GG	TT	CC	GT	CT	AC	CC	AA	CT	AA	GG	AG	CC	CT
7._GC-01-134-7-11	GG	TT	CC	GT	CT	AC	CC	AA	CT	AA	GG	AG	CC	CT
8._GC-01-134-7-11	GG	TT	CC	GT	CT	AC	CC	AA	CT	AA	GG	AG	CC	CT
9._CC_137	GG	_	CC	GT	CT	AC	CC	AA	CT	AA	GG	AG	CC	CT
10._GC-01-134-7-11	GG	_	CC	GT	CT	AC	CC	AA	CT	AA	GG	AG	CC	CT
11._RUQ_1637	_	_	CC	_	_	_	_	AA	_	_	_	_	AC	_
12._CC_137	GG	AT	AC	GG	CT	AA	GG	AG	CC	AT	GG	AA	CC	CT
13._GC-01-134-7-11	GG	AT	AC	GG	CT	AA	GG	AG	CC	AT	GG	AA	CC	CT
14._RUQ_1637	GG	TT	CC	AC	AG	AC	GG	AA	AG	AA	GG	_	CC	_
15._MITC-000809	GG	TT	CC	AC	AG	AC	GG	AA	AG	AA	GG	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	CC	CT	AG	GG	GG	CC	TT	GG	AA	CT	AG	CT
1._CC_137	TT	CC	_	CT	AG	GG	GG	CC	TT	GG	AA	CT	AG	CT
2._RUQ_1637	TT	CC	CC	CT	_	GG	GG	CC	_	_	_	_	AG	CT
3._CC_137	TT	CC	CC	CT	GG	GG	GG	CC	TT	GG	AA	CT	AG	CT
4._CC_137	TT	CC	CC	CT	GG	GG	GG	CC	TT	GG	AA	CT	AG	CT
5._CC_137	TT	CC	CC	CT	GG	GG	GG	CC	TT	GG	AA	CT	AG	CT
6._GC-01-134-7-11	TT	CC	CC	CT	GG	GG	GG	CC	TT	GG	AA	CT	AG	CT
7._GC-01-134-7-11	TT	CC	CC	CT	GG	GG	GG	CC	TT	GG	AA	CT	AG	CT
8._GC-01-134-7-11	TT	CC	CC	CT	GG	GG	GG	CC	TT	GG	AA	CT	AG	CT
9._CC_137	TT	CC	CC	CT	GG	GG	GG	CC	TT	GG	AA	CT	AG	CT
10._GC-01-134-7-11	TT	CC	CC	CT	GG	GG	GG	CC	TT	GG	AA	CT	AG	CT
11._RUQ_1637	_	CC	CC	_	AG	GG	GG	_	_	_	_	_	AG	_
12._CC_137	GT	CC	CC	CC	AA	GT	CC	CC	TT	GG	AA	CC	AA	CT
13._GC-01-134-7-11	GT	CC	CC	CC	AA	GT	CC	CC	TT	GG	AA	CC	AA	CT
14._RUQ_1637	AA	CC	CC	AG	_	CC	CC	GG	AA	GG	AA	AG	AG	AG
15._MITC-000809	AA	CC	CC	AG	_	CC	CC	GG	AA	GG	AA	AG	AG	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	AA	CT	CT	TT	CC	AA	TT	CT	AG	CT	X_X	X_X	X_X
1._CC_137	AA	AA	CT	CT	TT	_	AA	TT	CT	_	_	X_X	X_X	X_X
2._RUQ_1637	_	_	_	_	TT	_	_	_	CT	AG	_	X_X	X_X	X_X
3._CC_137	AA	AA	CT	CT	TT	CC	AA	TT	CT	AG	CT	X_X	X_X	X_X
4._CC_137	AA	AA	CT	CT	TT	CC	AA	TT	CT	AG	CT	X_X	X_X	X_X
5._CC_137	AA	AA	CT	CT	TT	CC	AA	TT	CT	AG	CT	X_X	X_X	X_X
6._GC-01-134-7-11	AA	AA	CT	CT	TT	CC	AA	TT	CT	AG	CT	X_X	X_X	X_X
7._GC-01-134-7-11	AA	AA	CT	CT	TT	CC	AA	TT	CT	AG	CT	X_X	X_X	X_X
8._GC-01-134-7-11	AA	AA	CT	CT	TT	CC	AA	TT	CT	AG	CT	X_X	X_X	X_X
9._CC_137	AA	AA	CT	CT	TT	CC	AA	TT	CT	AG	CT	X_X	X_X	X_X
10._GC-01-134-7-11	AA	AA	CT	CT	TT	CC	AA	TT	CT	AG	CT	X_X	X_X	X_X
11._RUQ_1637	AA	_	CT	_	TT	_	_	_	_	_	_	X_X	X_X	X_X
12._CC_137	AA	AA	CT	CC	GT	CT	AA	TT	CT	GG	CT	X_X	X_X	X_X
13._GC-01-134-7-11	AA	AA	CT	CC	GT	CT	AA	TT	CT	GG	CT	X_X	X_X	X_X
14._RUQ_1637	AA	AA	_	_	AA	GG	AA	AA	AG	AG	AG	X_X	X_X	X_X
15._MITC-000809	AA	AA	_	_	AA	GG	AA	AA	AG	AG	AG	X_X	X_X	X_X

Input profile: CC_137 RUQ_1637

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._CC_137

identical
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._CC_137 RUQ_1637

identical
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._CC_137

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 6

Dapeng Zhang, 2016

4._CC_137

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 5

Dapeng Zhang, 2016

5._CC_137

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._CC_137 GC-01-134-7-11

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._CC_137 GC-01-134-7-11

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._CC_137 GC-01-134-7-11

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._CC_137

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 1

Dapeng Zhang, 2016

10._CC_137 GC-01-134-7-11

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._CC_137 RUQ_1637

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

12._CC_137

71.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 4

Dapeng Zhang, 2016

13._CC_137 GC-01-134-7-11

71.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._CC_137 RUQ_1637

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._CC_137 MITC-000809

50 %
34 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1484	39	TcSNP1520